Wang Lab at UNMC

Publication

2025

AttentionAML: An Attention-based Deep Learning Framework for Accurate Molecular Categorization of Acute Myeloid Leukemia
AttentionAML: An Attention-based Deep Learning Framework for Accurate Molecular Categorization of Acute Myeloid Leukemia
Lusheng Li, Joseph D. Khoury, Jieqiong Wang, Shibiao Wan
Cold Spring Harbor Laboratory  ·  May-22-2025  ·  doi:10.1101/2025.05.20.655179
Model-free High Dimensional Mediator Selection with False Discovery Rate Control
Model-free High Dimensional Mediator Selection with False Discovery Rate Control
Runqiu Wang, Ran Dai, Jieqiong Wang, Charlie Soh, Ziyang Xu, Mohamed Azzam, Cheng Zheng
arXiv  ·  May-14-2025  ·  doi:10.48550/arXiv.2505.09105
RPSLearner: A novel approach based on random projection and deep stacking learning for categorizing NSCLC
RPSLearner: A novel approach based on random projection and deep stacking learning for categorizing NSCLC
Xinchao Wu, Jieqiong Wang, Shibiao Wan
Cold Spring Harbor Laboratory  ·  May-07-2025  ·  doi:10.1101/2025.05.01.651699
A Comprehensive Review on RNA Subcellular Localization Prediction
A Comprehensive Review on RNA Subcellular Localization Prediction
Cece Zhang, Xuehuan Zhu, Nick Peterson, Jieqiong Wang, Shibiao Wan
arXiv  ·  Apr-24-2025  ·  doi:10.48550/arXiv.2504.17162
Abstract 5022: iS3RGs: Discriminating diverse medulloblastoma subtypes by leveraging heterogenous transcriptome data with batch effects
Abstract 5022: iS3RGs: Discriminating diverse medulloblastoma subtypes by leveraging heterogenous transcriptome data with batch effects
Mengtao Sun, Jieqiong Wang, Shibiao Wan
Cancer Research  ·  Apr-21-2025  ·  doi:10.1158/1538-7445.AM2025-5022
Abstract 7425: AttentionAML: An attention-based deep learning model for accurate identification of childhood acute myeloid leukemia subtypes
Abstract 7425: AttentionAML: An attention-based deep learning model for accurate identification of childhood acute myeloid leukemia subtypes
Lusheng Li, Joseph D. Khoury, Jieqiong Wang, Shibiao Wan
Cancer Research  ·  Apr-21-2025  ·  doi:10.1158/1538-7445.AM2025-7425
Abstract 1104: Identifying pancreatic cancer subtypes by a novel meta-learning model
Abstract 1104: Identifying pancreatic cancer subtypes by a novel meta-learning model
Nick Boos Peterson, Mengtao Sun, Jieqiong Wang, Shibiao Wan
Cancer Research  ·  Apr-21-2025  ·  doi:10.1158/1538-7445.AM2025-1104
Abstract 1098: Combining random projection and stacking learning for NSCLC subtype classification based on transcriptomic data
Abstract 1098: Combining random projection and stacking learning for NSCLC subtype classification based on transcriptomic data
Xinchao Wu, Jieqiong Wang, Shibiao Wan
Cancer Research  ·  Apr-21-2025  ·  doi:10.1158/1538-7445.AM2025-1098
Abstract 3620: A weighted multi-modal transfer learning model for alleviating racial disparities in breast cancer
Abstract 3620: A weighted multi-modal transfer learning model for alleviating racial disparities in breast cancer
Min-jeong Baek, Lusheng Li, Jieqiong Wang, Vimla Band, Shibiao Wan
Cancer Research  ·  Apr-21-2025  ·  doi:10.1158/1538-7445.AM2025-3620
Abstract 6314: Development of g-rate based random forest machine learning model to predict overall survival for patients with metastatic prostate cancer
Abstract 6314: Development of g-rate based random forest machine learning model to predict overall survival for patients with metastatic prostate cancer
Mohamed Azzam, Harshraj Leuva, Mengxi Zhou, Benjamin A. Teply, Raymond C. Bergan, Susan Elaine Bates, Shibiao Wan, Antonio Tito Fojo, Jieqiong Wang
Cancer Research  ·  Apr-21-2025  ·  doi:10.1158/1538-7445.AM2025-6314
Abstract 5016: Enhancing prostate pelvic multimodality data generating with conditional generative models: A Pix2Pix-based approach for MRI-to-PET synthesis
Abstract 5016: Enhancing prostate pelvic multimodality data generating with conditional generative models: A Pix2Pix-based approach for MRI-to-PET synthesis
Ruobing Liu, Shuo Wang, Shibiao Wan, Jieqiong Wang
Cancer Research  ·  Apr-21-2025  ·  doi:10.1158/1538-7445.AM2025-5016
Accurate identification of medulloblastoma subtypes from diverse data sources with severe batch effects by RaMBat
Accurate identification of medulloblastoma subtypes from diverse data sources with severe batch effects by RaMBat
Mengtao Sun, Jieqiong Wang, Shibiao Wan
Cold Spring Harbor Laboratory  ·  Feb-28-2025  ·  doi:10.1101/2025.02.24.640010
i g i -Rate based machine learning model to predict overall survival OS in patients with metastatic prostate cancer mPC while on treatment.
g -Rate–based machine learning model to predict overall survival (OS) in patients with metastatic prostate cancer (mPC) while on treatment.
Harshraj Leuva, Jieqiong Wang, Mohamed Azzam, Mengxi Zhou, Benjamin A. Teply, Raymond C. Bergan, Susan Elaine Bates, Antonio Tito Fojo
Journal of Clinical Oncology  ·  Feb-10-2025  ·  doi:10.1200/JCO.2025.43.5_suppl.242

2024

Functional Connectivity Alterations in Cocaine Use Disorder: Insights from the Triple Network Model and the Addictions Neuroclinical Assessment Framework
Functional Connectivity Alterations in Cocaine Use Disorder: Insights from the Triple Network Model and the Addictions Neuroclinical Assessment Framework
Ziyang Xu, Lie Li, Ruobing Liu, Mohamed Azzam, Shibiao Wan, Jieqiong Wang
Cold Spring Harbor Laboratory  ·  Nov-14-2024  ·  doi:10.1101/2024.11.12.623073
SAMP: Identifying antimicrobial peptides by an ensemble learning model based on proportionalized split amino acid composition
SAMP: Identifying antimicrobial peptides by an ensemble learning model based on proportionalized split amino acid composition
Junxi Feng, Mengtao Sun, Cong Liu, Weiwei Zhang, Changmou Xu, Jieqiong Wang, Guangshun Wang, Shibiao Wan
Briefings in Functional Genomics  ·  Nov-01-2024  ·  10.1093/bfgp/elae046
A review of artificial intelligence-based brain age estimation and its applications for related diseases
A review of artificial intelligence-based brain age estimation and its applications for related diseases
Mohamed Azzam, Ziyang Xu, Ruobing Liu, Lie Li, Kah Meng Soh, Kishore B Challagundla, Shibiao Wan, Jieqiong Wang
Briefings in Functional Genomics  ·  Oct-22-2024  ·  doi:10.1093/bfgp/elae042
This review paper presents recent machine learning techniques used in brain age estimation (BAE) studies.
WIMOAD: Weighted Integration of Multi-Omics Data with Meta Learning for Alzheimer s Disease Diagnosis
WIMOAD: Weighted Integration of Multi-Omics Data with Meta Learning for Alzheimer’s Disease Diagnosis
Hanyu Xiao, Jieqiong Wang, Shibiao Wan
Cold Spring Harbor Laboratory  ·  Sep-27-2024  ·  doi:10.1101/2024.09.25.614862
RanBALL: An Ensemble Random Projection Model for Identifying Subtypes of B-Cell Acute Lymphoblastic Leukemia
RanBALL: An Ensemble Random Projection Model for Identifying Subtypes of B-Cell Acute Lymphoblastic Leukemia
Lusheng Li, Hanyu Xiao, Xinchao Wu, Zhenya Tang, Joseph D. Khoury, Jieqiong Wang, Shibiao Wan
Cold Spring Harbor Laboratory  ·  Sep-26-2024  ·  doi:10.1101/2024.09.24.614777
Locus coeruleus microstructural integrity is associated with vigilance vulnerability to sleep deprivation
Locus coeruleus microstructural integrity is associated with vigilance vulnerability to sleep deprivation
Peng Quan, Tianxin Mao, Xiaocui Zhang, Ruosi Wang, Hui Lei, Jieqiong Wang, Wanting Liu, David F. Dinges, Caihong Jiang, Hengyi Rao
Human Brain Mapping  ·  Sep-01-2024  ·  doi:10.1002/hbm.70013
A Review for Artificial Intelligence Based Protein Subcellular Localization
A Review for Artificial Intelligence Based Protein Subcellular Localization
Hanyu Xiao, Yijin Zou, Jieqiong Wang, Shibiao Wan
Biomolecules  ·  Mar-27-2024  ·  doi:10.3390/biom14040409
Abstract 4800: Reducing health disparities for prostate adenocarcinoma by integrating multi-omics data via a multi-modal transfer learning approach
Abstract 4800: Reducing health disparities for prostate adenocarcinoma by integrating multi-omics data via a multi-modal transfer learning approach
Lusheng Li, Jieqiong Wang, Shibiao Wan
Cancer Research  ·  Mar-22-2024  ·  doi:10.1158/1538-7445.AM2024-4800
Abstract 4907: RanBALL: Identifying B-cell acute lymphoblastic leukemia subtypes based on an ensemble random projection model
Abstract 4907: RanBALL: Identifying B-cell acute lymphoblastic leukemia subtypes based on an ensemble random projection model
Lusheng Li, Hanyu Xiao, Joseph D. Khoury, Jieqiong Wang, Shibiao Wan
Cancer Research  ·  Mar-22-2024  ·  doi:10.1158/1538-7445.AM2024-4907
Multi-omics based artificial intelligence for cancer research
Multi-omics based artificial intelligence for cancer research
Lusheng Li, Mengtao Sun, Jieqiong Wang, Shibiao Wan
Advances in Cancer Research  ·  Jan-01-2024  ·  doi:10.1016/bs.acr.2024.06.005

2023

Editorial: Bioinformatics analysis of omics data for biomarker identification in clinical research, Volume II
Editorial: Bioinformatics analysis of omics data for biomarker identification in clinical research, Volume II
Mengtao Sun, Lusheng Li, Hanyu Xiao, Junxi Feng, Jieqiong Wang, Shibiao Wan
Frontiers in Genetics  ·  Jul-24-2023  ·  doi:10.3389/fgene.2023.1256468
Editorial: Single cell meets metabolism and cancer biology
Editorial: Single cell meets metabolism and cancer biology
Jieqiong Wang, Shibiao Wan
Frontiers in Oncology  ·  Feb-08-2023  ·  doi:10.3389/fonc.2023.1125186

2022

A Sequence Obfuscation Method for Protecting Personal Genomic Privacy
A Sequence Obfuscation Method for Protecting Personal Genomic Privacy
Shibiao Wan, Jieqiong Wang
Frontiers in Genetics  ·  Apr-13-2022  ·  doi:10.3389/fgene.2022.876686

2020

Neural and behavioral correlates of episodic memory are associated with temporal discounting in older adults
Neural and behavioral correlates of episodic memory are associated with temporal discounting in older adults
Karolina M. Lempert, Dawn J. Mechanic-Hamilton, Long Xie, Laura E.M. Wisse, Robin de Flores, Jieqiong Wang, Sandhitsu R. Das, Paul A. Yushkevich, David A. Wolk, Joseph W. Kable
Neuropsychologia  ·  Sep-01-2020  ·  doi:10.1016/j.neuropsychologia.2020.107549
Two nights of recovery sleep restores hippocampal connectivity but not episodic memory after total sleep deprivation
Two nights of recovery sleep restores hippocampal connectivity but not episodic memory after total sleep deprivation
Ya Chai, Zhuo Fang, Fan Nils Yang, Sihua Xu, Yao Deng, …, Junghoon J. Kim, David A. Wolk, John A. Detre, David F. Dinges, Hengyi Rao
Scientific Reports  ·  May-29-2020  ·  doi:10.1038/s41598-020-65086-x

2018

Classifying and characterizing nicotine use disorder with high accuracy using machine learning and resting state scp fMRI scp
Classifying and characterizing nicotine use disorder with high accuracy using machine learning and resting‐state fMRI
Reagan R. Wetherill, Hengyi Rao, Nathan Hager, Jieqiong Wang, Teresa R. Franklin, Yong Fan
Addiction Biology  ·  Jun-27-2018  ·  doi:10.1111/adb.12644
Computer-Aided Prognosis: Accurate Prediction of Patients with Neurologic and Psychiatric Diseases via Multi-modal MRI Analysis
Computer-Aided Prognosis: Accurate Prediction of Patients with Neurologic and Psychiatric Diseases via Multi-modal MRI Analysis
Huiguang He, Hongwei Wen, Dai Dai, Jieqiong Wang
Intelligent Systems Reference Library  ·  Jan-01-2018  ·  doi:10.1007/978-3-319-68843-5_10

2017

Is Congenital Amusia a Disconnection Syndrome A Study Combining Tract- and Network-Based Analysis
Is Congenital Amusia a Disconnection Syndrome? A Study Combining Tract- and Network-Based Analysis
Jieqiong Wang, Caicai Zhang, Shibiao Wan, Gang Peng
Frontiers in Human Neuroscience  ·  Sep-29-2017  ·  doi:10.3389/fnhum.2017.00473
Altered Spontaneous Brain Activity in Children with Early Tourette Syndrome: a Resting-state fMRI Study
Altered Spontaneous Brain Activity in Children with Early Tourette Syndrome: a Resting-state fMRI Study
Yue Liu, Jieqiong Wang, Jishui Zhang, Hongwei Wen, Yue Zhang, Huiying Kang, Xu Wang, Wenfeng Li, Huiguang He, Yun Peng
Scientific Reports  ·  Jul-06-2017  ·  doi:10.1038/s41598-017-04148-z

2016

Altered functional connectivity within and between the default model network and the visual network in primary open-angle glaucoma: a resting-state fMRI study
Altered functional connectivity within and between the default model network and the visual network in primary open-angle glaucoma: a resting-state fMRI study
Jieqiong Wang, Ting Li, Peng Zhou, Ningli Wang, Junfang Xian, Huiguang He
Brain Imaging and Behavior  ·  Oct-04-2016  ·  doi:10.1007/s11682-016-9597-3
Abnormal interhemispheric resting-state functional connectivity in primary open-angle glaucoma
Abnormal interhemispheric resting-state functional connectivity in primary open-angle glaucoma
Peng Zhou, Jieqiong Wang, Ting Li, Ningli Wang, Junfang Xian, Huiguang He
2016 38th Annual International Conference of the IEEE Engineering in Medicine and Biology Society (EMBC)  ·  Aug-01-2016  ·  doi:10.1109/EMBC.2016.7591617
Using support vector machines with tract-based spatial statistics for automated classification of Tourette syndrome children
Using support vector machines with tract-based spatial statistics for automated classification of Tourette syndrome children
Hongwei Wen, Yue Liu, Jieqiong Wang, Jishui Zhang, Yun Peng, Huiguang He
SPIE Proceedings  ·  Mar-24-2016  ·  doi:10.1117/12.2216647
A diagnosis model for early Tourette syndrome children based on brain structural network characteristics
A diagnosis model for early Tourette syndrome children based on brain structural network characteristics
Hongwei Wen, Yue Liu, Jieqiong Wang, Jishui Zhang, Yun Peng, Huiguang He
SPIE Proceedings  ·  Mar-24-2016  ·  doi:10.1117/12.2217308
Combining tract and atlas based analysis reveals microstructural abnormalities in early Tourette syndrome children
Combining tract‐ and atlas‐based analysis reveals microstructural abnormalities in early Tourette syndrome children
Hongwei Wen, Yue Liu, Jieqiong Wang, Islem Rekik, Jishui Zhang, Yue Zhang, Hongwei Tian, Yun Peng, Huiguang He
Human Brain Mapping  ·  Mar-01-2016  ·  doi:10.1002/hbm.23146
Graph theoretical analysis reveals the reorganization of the brain network pattern in primary open angle glaucoma patients
Graph theoretical analysis reveals the reorganization of the brain network pattern in primary open angle glaucoma patients
Jieqiong Wang, Ting Li, Ningli Wang, Junfang Xian, Huiguang He
European Radiology  ·  Feb-11-2016  ·  doi:10.1007/s00330-016-4221-x
Structural brain alterations in primary open angle glaucoma: a 3T MRI study
Structural brain alterations in primary open angle glaucoma: a 3T MRI study
Jieqiong Wang, Ting Li, Bernhard A. Sabel, Zhiqiang Chen, Hongwei Wen, …, Diya Yang, Weiwei Chen, Ningli Wang, Junfang Xian, Huiguang He
Scientific Reports  ·  Jan-08-2016  ·  doi:10.1038/srep18969
Functional Reorganizations of Brain Network in Prelingually Deaf Adolescents
Functional Reorganizations of Brain Network in Prelingually Deaf Adolescents
Wenjing Li, Jianhong Li, Jieqiong Wang, Peng Zhou, Zhenchang Wang, Junfang Xian, Huiguang He
Neural Plasticity  ·  Jan-01-2016  ·  doi:10.1155/2016/9849087

2015

Automatic segmentation of the lateral geniculate nucleus: Application to control and glaucoma patients
Automatic segmentation of the lateral geniculate nucleus: Application to control and glaucoma patients
Jieqiong Wang, Wen Miao, Jing Li, Meng Li, Zonglei Zhen, Bernhard Sabel, Junfang Xian, Huiguang He
Journal of Neuroscience Methods  ·  Nov-01-2015  ·  doi:10.1016/j.jneumeth.2015.08.006

2014

Alternations of functional connectivity in amblyopia patients: a resting-state fMRI study
Alternations of functional connectivity in amblyopia patients: a resting-state fMRI study
Jieqiong Wang, Ling Hu, Wenjing Li, Junfang Xian, Likun Ai, Huiguang He
SPIE Proceedings  ·  Mar-13-2014  ·  doi:10.1117/12.2043424
Age estimation using cortical surface pattern combining thickness with curvatures
Age estimation using cortical surface pattern combining thickness with curvatures
Jieqiong Wang, Wenjing Li, Wen Miao, Dai Dai, Jing Hua, Huiguang He
Medical & Biological Engineering & Computing  ·  Jan-07-2014  ·  doi:10.1007/s11517-013-1131-9

2013

Structural Abnormalities in Early Tourette Syndrome Children: A Combined Voxel-Based Morphometry and Tract-Based Spatial Statistics Study
Structural Abnormalities in Early Tourette Syndrome Children: A Combined Voxel-Based Morphometry and Tract-Based Spatial Statistics Study
Yue Liu, Wen Miao, Jieqiong Wang, Peiyi Gao, Guangheng Yin, …, Zhiying Ji, Tong Yu, B. A. Sabel, Huiguang He, Yun Peng
PLoS ONE  ·  Sep-30-2013  ·  doi:10.1371/journal.pone.0076105

2012

Human Age Estimation with Surface-Based Features from MRI Images
Human Age Estimation with Surface-Based Features from MRI Images
Jieqiong Wang, Dai Dai, Meng Li, Jing Hua, Huiguang He
Lecture Notes in Computer Science  ·  Jan-01-2012  ·  doi:10.1007/978-3-642-35428-1_14
Classification of ADHD children through multimodal magnetic resonance imaging
Classification of ADHD children through multimodal magnetic resonance imaging
Dai Dai, Jieqiong Wang, Jing Hua, Huiguang He
Frontiers in Systems Neuroscience  ·  Jan-01-2012  ·  doi:10.3389/fnsys.2012.00063

2009

Flooded area detection using multi-temporal TerraSAR-X data
Flooded area detection using multi-temporal TerraSAR-X data
Xin Lu, Jieqoing Wang, Zhenghuan Wang, Hong Sun
2009 2nd Asian-Pacific Conference on Synthetic Aperture Radar  ·  Oct-01-2009  ·  doi:10.1109/APSAR.2009.5374134